Pathogen Research Databases
COVID-19 Viral Genome Analysis Pipeline
The COVID-19 Viral Genome Analysis Pipeline provides analyses and tools for exploring accruing mutations in hCoV-19 (SARS-CoV-2) geographically and over time, with an emphasis on the Spike protein, using data from GISAID.
The SARS-CoV-2 sequence data used for these analyses was updated from GISAID on Sep 9, 2026.
With the ever growing database of sequences in GISAID, sometimes the web connection times out before the analysis is complete. If you have this problem, please check "email results" and an email with a link will be sent to you when the job is complete.
HIV Databases
The HIV and HCV databases contain data on viral genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials. The websites also gives access to a large number of tools that can be used to analyze these data. These projects are funded by the Division of AIDS of the National Institute of Allergy and Infectious Diseases (NIAID), a part of the National Institutes of Health (NIH).
HCV Databases
The Hepatitis C Virus (HCV) database project is funded by the Division of Microbiology and Infectious Diseases of the National Institute of Allergies and Infectious Diseases (NIAID). The HCV database project started as a spin-off from the HIV database project. There are two databases for HCV, a sequence database and a database of immunological epitopes. They both come with a set of tools that still partially overlap with those offered by the HIV site.
HFV/Ebola Database
The Ebola database contains Ebola-associated genetic and immunological data, including the search interface, genome browser, curated nucleotide and protein sequence alignments (on the genus, species and outbreak levels), lists and genomic maps of T-cell epitopes and antibody binding sites, a list of important functional domains, and many web-based analysis tools.
Contact
- Sequence Database