Publications - 2004

Competition-driven network dynamics: emergence of a scale-free leadership structure and collective effciency,
M. Anghel, Z. Toroczkai, K. E. Bassler, G. Korniss,
Phys. Rev. Lett. 92, 058701 (2004).

Unicyclic components in random graphs,
E. Ben-Naim, P. L. Krapivsky,
Jour. Phys. A 37, L189 (2004).

Leadership statistics in random structures,
E. Ben-Naim, P. L. Krapivsky,
EuroPhys. Lett. 65, 151 (2004).

Winning quick and dirty: the greedy random walk,
E. Ben-Naim, S. Redner,
Jour. Phys. A 37, 11321 (2004).

Random geometric series,
E. Ben-Naim, P. L. Krapivsky,
Jour. Phys. A 37, 5949 (2004).

Size of outbreaks near the epidemic threshold,
E. Ben-Naim, P. L. Krapivsky,
Phys. Rev. E 69, 050901 (2004).

Finite-size °uctuations in interacting particle systems,
E. Ben-Naim, P. L. Krapivsky,
Phys. Rev. E 69, 046113 (2004).

Survival of quantum effects for observables after decoherence,
G. P. Berman, A. R. Bishop, F. Borgonovi, D. A. R. Dalvit,
Phys. Rev. A 69, 062110 (2004).

Irregular dynamics in a one-dimensional Bose system,
G. P. Berman, F. Borgonovi, F. M. Izrailev, A. Smerzi,
Phys. Rev. Lett. 92, 030404 (2004).

Wave function collapses in a single spin magnetic resonance force microscopy,
G. P. Berman, F. Borgonovi, V. Tsifrinovich,
Phys. Lett. A 331, 187 (2004).

Regular and random magnetic resonance force microscopy signal with a cantilever oscillating parallel to a sample surface,
G. P. Berman, V. N. Gorshkov, V. I. Tsifrinovich,
Jour. Appl. Phys. 96, 5081 (2004).

Quantum dynamics of the oscillating cantilever-driven reversals in magnetic resonance force microscopy,
G. P. Berman, F. Borgonovi,
V. I. Tsifrinovich Quant. Info. Comp. 4, 103 (2004).

Reduction of magnetic noise in magnetic resonance force microscopy,
G. P. Berman, V. N. Gorshkov,
V. I. Tsifrinovich, Phys. Rev. B 69, 212408 (2004).

Minimization of nonresonant e®ects in a scalable ising spin quantum computer,
G. P. Berman, D. I. Kamenev,
V. I. Tsifrinovich, Int. Jour. Quant. Info. 2, 379 (2004).

Analytic solutions for quantum logic gates and modeling pulse errors in a quantum computer with a Heisenberg interaction,
G. P. Berman, D. I. Kamenev,
V. I. Tsifrinovich, Int. Jour. Quant. Info. 2, 171 (2004).

Recognition of homo- and heterosubtypic variants of in°uenza A viruses by human CD8+T lymphocytes,
A. C. M. Boon, G. de Mutsert, D. van Baarle, D. J. Smith, A. S. Lapedes, R. A. M. Fouchier, K. Sintnicolaas, A. D. M. E. Osterhaus, G. F. Rimmelzwaan,
Jour. Immun. 172, 2453 (2004).

PMD-induced °uctuations of bit-error rate in optical ¯ber systems,
V. Chernyak, M. Chertkov, I. Gabitov, I. Kolokolov, V. Lebedev,
Jour. Lightwave Tech. 22, 1155 (2004).

Error correction on a tree: An instanton approach,
V. Chernyak, M. Chertkov, M. G. Stepanov, B. Vasic,
Phys. Rev. Lett. 93, 198702 (2004).

Periodic compensation of polarization mode dispersion,
M. Chertkov, I. Gabitov, I. Kolokolov, T. Schafer,
Jour. Opt. Soc. Amer. B 21, 486 (2004).

Outage probability for soliton transmission,
V. Chernyak, M. Chertkov, I. Kolokolov, A. Peleg,
EuroPhys. Lett. 66, 499 (2004).

Instanton method of post-error-correction analytical evaluation,
V. Chernyak, M. Chertkov, M. Stepanov, B. Vasic,
IEEE Info. Theor. Work. Proc. 220 (2004).

Improving the sensitivity of frequency modulation spectroscopy using nanomechanical cantilevers,
B. M. Chernobrod, G. P. Berman, P. W. Milonni,
Appl. Phys. Lett. 85, 3896 (2004).

Effects of electrostatic fields and Casimir force on cantilever vibrations,
A. A. Chumak, P. W. Milonni, G. P. Berman,
Phys. Rev. B 70, 085407 (2004).

Error comparison in tracked and untracked spherical simulations,
S. Dutta, J. Glimm, J. W. Grove, D. H. Sharp, Y. M. Zhang,
Comp. & Math. Appl. 48, 1733 (2004).

Spherical Richtmyer-Meshkov instability for axisymmetric °ow,
S. Dutta, J. Glimm, J. W. Grove, D. H. Sharp, Y. M. Zhang,
Math. Comp. Simul. 65, 417 (2004).

Modelling disease outbreaks in realistic urban social networks,
S. Eubank, H. Guclu, V. S. A. Kumar, M. V. Marathe, A. Srinivasan, Z. Toroczkai, N. Wang,
Nature 429, 6988 (2004).

Statistical riemann problems and a composition law for errors in numerical solutions of shock physics problems,
J. Glimm, J. W. Grove, Y. H. Kang, T. Lee, X. L. Li, D. H. Sharp, Y. Yu, K. Ye, M. Zhao,
SIAM Jour. Sci. Comp. 26, 666 (2004).

Lieb-Schultz-Mattis in higher dimensions,
M. B. Hastings,
Phys. Rev. B 69, 104431 (2004).

Locality in quantum and Markov dynamics on lattices and networks,
M. B. Hastings,
Phys. Rev. Lett. 93, 140402 (2004).

An ²-expansion for small-world networks,
M. B. Hastings,
Eur. Phys. Jour. B 42, 297 (2004).

Decay of correlations in Fermi systems at nonzero temperature,
M. B. Hastings,
Phys. Rev. Lett. 93, 126402 (2004).

Spin-orbit scattering and time-reversal symmetry: Detection of a spin by tunneling,
M. B. Hastings,
Phys. Rev. B 70, 161301 (2004).

Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster,
J. Jaeger, M. Blagov, D. Kosman, K. N. Kozlov, E. Myasnikova, S. Surkova,C. E. Vanario- Alonso, M. Samsonova, D. H. Sharp, et. al.,
Genetics 167, 1721 (2004).

Dynamic control of positional information in the early Drosophila embryo,
J. Jaeger, S. Surkova, M. Blagov, H. Janssens, D. Kosman, K. N. Kozlov, E. Myasnikova, C. E. Vanario-Alonso, M. Samsonova, D. H. Sharp et. al.,
Nature 430, 368 (2004).

Classical and quantum °uctuation theorems for heat exchange,
C. Jarzynski, D. K. Wojcik,
Phys. Rev. Lett. 92, 230602 (2004).

Nonequilibrium work theorem for a system strongly coupled to a thermal environment,
C. Jarzynski,
Jour. Stat. Mech. P09005 (2004).

Modeling full adder in ising spin quantum computer with 1000 qubits using quantum maps,
D. I. Kamenev, G. P. Berman, R. B. Kassman, V. I. Tsifrinovich,
Int. Jour. Quant. Info. 2, 323 (2004).

Stable distributions in stochastic fragmentation,
P. L. Krapivsky, E. Ben-Naim, I. Grosse,
Jour. Phys. A 37, 2863 (2004).

Roughness Scaling for Edwards-Wilkinson Relaxation in Small-World Networks,
B. Kozma, M. B. Hastings, G. Korniss,
Phys. Rev. Lett. 92, 108701 (2004).

Nonlinear Kronig-Penney model,
W. D. Li, A. Smerzi,
Phys. Rev. E 70, 016605 (2005).

Instability versus equilibrium propagation of a laser beam in plasma,
P. M. Lushnikov, H. A. Rose,
Phys. Rev. Lett. 92, 255003 (2004).

Propagation of sound in a Bose-Einstein condensate in an optical lattice,
C. Menotti, M. Kramer, A. Smerzi, L. Pitaevskii, S. Stringari,
Phys. Rev. A 70, 023609 (2004).

Re-entrant disordering of colloidal molecular crystals on two-dimensional periodic substrates,
M. Mikulis, C. J. O. Reichhardt, C. Reichhardt, R. T. Scalettar, G. T. Zimanyi,
Jour. Physi. Cond. Matt. 17 16, 7909 (2004).

Quantum-limited sensitivity of single-electron-transistor-based displacement detectors,
D. Mozyrsky, I. Martin, M. B. Hastings,
Phys. Rev. Lett. 92, 018303 (2004).

Inelastic interchannel collisions of pulses in optical ¯bers in the presence of third-order dispersion,
A. Peleg, M. Chertkov, I. Gabitov,
Jour. Opt. Soc. Amer. B 21, 18 (2004).

Insulating behavior of a trapped ideal fermi gas,
L. Pezze, L. Pitaevskii, A. Smerzi, S. Stringari, G. Modugno, E. de Mirandes, F. Ferlaino, H. Ott, G. Roati, M. Inguscio,
Phys. Rev. Lett. 93, 120401 (2004).

Parametric and modulational instabilities of the discrete nonlinear Schrodinger equation,
Z. Rapti, P. G. Kevrekidis, A. Smerzi, A. R. Bishop,
Jour. Phys. B 37, S257 (2004).

Variational approach to the modulational instability,
Z. Rapti, P. G. Kevrekidis, A. Smerzi, A. R. Bishop,
Phys. Rev. E 69, 017601 (2004).

Nonlinear dynamics, rectification, and phase locking for particles on symmetrical twodimensional periodic substrates with dc and circular ac drives,
C. Reichhardt, C. J. O. Reichhardt, M. B. Hastings,
Phys. Rev. E 69, 056115 (2004).

Do vortices entangle?,
C. J. O. Reichhardt, M. B. Hastings,
Phys. Rev. Lett. 92, 157002 (2004).

Ratchet superconducting vortex cellular automata,
C. J. O. Reichhardt, C. Reichhardt, M. B. Hastings, B. Janko,
Physica C 404, 266 (2004).

Fibrillar templates and soft phases in systems with short-range dipolar and long-range interactions,
C. J. O. Reichhardt, C. Reichhardt, A. R. Bishop,
Phys. Rev. Lett. 92, 016801 (2004).

Dynamic regimes and spontaneous symmetry breaking for driven colloids on triangular substrates,
C. Reichhardt, C. J. O. Reichhardt,
EuroPhys. Lett. 68, 303 (2004).

Local Melting and Drag for a Particle Driven through a Colloidal Crystal,
C. Reichhardt, C. J. O. Reichhardt,
Phys. Rev. Lett. 92, 108301 (2004).

Noise at the crossover from wigner liquid to wigner glass,
C. Reichhardt, C. J. O. Reichhardt,
Phys. Rev. Lett. 93, 176405 (2004).

Ratchet effects for vortices in superconductors with periodic pinning arrays,
C. Reichhardt, C. J. O. Reichhardt,
Physica C 404, 302 (2004).

Directional locking effects and dynamics for particles driven through a colloidal lattice,
C. Reichhardt, C. J. O. Reichhardt,
Phys. Rev. E 69, 041405 (2005).

Dynamics and melting of stripes, crystals, and bubbles with quenched disorder,
C. J. O. Reichhardt, C. Reichhardt, I. Martin, A. R. Bishop,
Physica D 193, 303 (2004).

Noise near charge ordering transitions,
C. Reichhardt,
SPIE Proc. Ser. 139 (2004).

Recognition of influenza virus epitope variants by human CTL,
G. F. Rimmelzwaan, A. C. M. Boon, G. de Mutsert, R. A. M. Fouchier, D. van Baarle, D. J. Smith, A. S. Lapedes, K. Sintnicolaas, A. D. M. E. Osterhaus,
Int. Cong. Ser. 1243, 145 (2004).

Finite-temperature renormalization group analysis of interaction e®ects in 2D lattices of Bose-Einstein condensates,
A. Smerzi, P. Sodano, A. Trombettoni,
Jour. Phys. B 37, S265 (2004).

Mapping the antigenic and genetic evolution of in°uenza virus,
D. J. Smith, A. S. Lapedes, J. C. de Jong, T. M. Bestebroer, G. F. Rimmelzwaan, A. D. M. E. Osterhaus, R. A. M. Fouchier,
Science 305, 371 (2004).

Universality in active chaos,
T. Tel, T. Nishikawa, A. E. Motter, C. Grebogi, Z. Toroczkai,
Chaos 14, 72 (2004).

Jamming is limited in scale-free systems,
Z. Toroczkai, K. E. Bassler,
Nature 428, 6984 (2004).

Experimental test of Hatano and Sasa's nonequilibrium steady-state equality,
E. H. Trepagnier, C. Jarzynski, F. Ritort, G. E. Crooks, C. J. Bustamante, J. Liphardt,
Proc. Nat. Acad. Sci. USA 101, 15038 (2004).

Efficient and robust initialization of a qubit register with fermionic atoms,
L. Viverit, C. Menotti, T. Calarco, A. Smerzi,
Phys. Rev. Lett. 93, 110401 (2004).

Combustion simulation using the Lattice Boltzmann method,
K. Yamamoto, X. Y. He, G. D. Doolen,
JSME Int. Jour. B 47, 403 (2004).